1. Home
  2. Species
  3. Lactuca sativa
  4. Sequence
  5. Lsat_1_v5_gn_7_5580.1

Lsat_1_v5_gn_7_5580.1


Description : RNA editing factor *(MEF100)


Gene families : OG0005129 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_5580.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_135


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004185 serine-type carboxypeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070008 serine-type exopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR046848 E_motif 621 683
IPR032867 DYW_dom 719 811
IPR002885 Pentatricopeptide_rpt 171 193
IPR002885 Pentatricopeptide_rpt 405 435
IPR002885 Pentatricopeptide_rpt 548 568
IPR002885 Pentatricopeptide_rpt 46 64
IPR002885 Pentatricopeptide_rpt 579 603
IPR002885 Pentatricopeptide_rpt 98 127
IPR002885 Pentatricopeptide_rpt 67 91
IPR002885 Pentatricopeptide_rpt 377 403
IPR002885 Pentatricopeptide_rpt 197 244
IPR002885 Pentatricopeptide_rpt 299 346
IPR002885 Pentatricopeptide_rpt 503 544
No external refs found!