Lsat_1_v5_gn_7_34701.1 (CFIM-25, ATCFIM-25)

Aliases : CFIM-25, ATCFIM-25

Description : component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im) complex

Gene families : OG0032878 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_34701.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_114

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005849	mRNA cleavage factor complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006378	mRNA polyadenylation	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005216	monoatomic ion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005253	monoatomic anion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005254	chloride channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005516	calmodulin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006811	monoatomic ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006820	monoatomic anion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006821	chloride transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0022832	voltage-gated channel activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030286	dynein complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR016706	Cleav_polyA_spec_factor_su5	28	217

External Links

No external refs found!

Lsat_1_v5_gn_7_34701.1 (CFIM-25, ATCFIM-25)

Expression Profile

Co-expression Networks

Functional Annotation