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  5. Lsat_1_v5_gn_7_108901.1

Lsat_1_v5_gn_7_108901.1


Description : not classified


Gene families : OG0002268 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002268_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_108901.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_254

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_66400.1 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003997 acyl-CoA oxidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005047 signal recognition particle binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005048 signal sequence binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005777 peroxisome IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006631 fatty acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006635 fatty acid beta-oxidation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008312 7S RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009062 fatty acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009606 tropism IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010274 hydrotropism IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016042 lipid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016054 organic acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019395 fatty acid oxidation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030258 lipid modification IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034440 lipid oxidation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0042277 peptide binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0042579 microbody IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044242 cellular lipid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046395 carboxylic acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0048500 signal recognition particle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072329 monocarboxylic acid catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR010666 Znf_GRF 22 66
No external refs found!