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  5. Lsat_1_v5_gn_6_53701.1

Lsat_1_v5_gn_6_53701.1 (RLP25, AtRLP25)


Aliases : RLP25, AtRLP25

Description : not classified


Gene families : OG0000116 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000116_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_53701.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_5_162400.1 XIP1, CEPR1 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_6_49060.1 RLP46, AtRLP46 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_6_49480.1 RLP20, AtRLP20 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_6_50340.1 RLP20, AtRLP20 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_6_51420.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004096 catalase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004672 protein kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004674 protein serine/threonine kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005216 monoatomic ion channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005741 mitochondrial outer membrane IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008037 cell recognition IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015267 channel activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016301 kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016310 phosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016740 transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019867 outer membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022803 passive transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031012 extracellular matrix IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031966 mitochondrial membrane IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031968 organelle outer membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0036211 protein modification process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043412 macromolecule modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046855 obsolete inositol phosphate dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048544 recognition of pollen IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0055085 transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071569 protein ufmylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 443 464
IPR001611 Leu-rich_rpt 467 487
IPR013955 Rep_factor-A_C 814 962
IPR001611 Leu-rich_rpt 42 98
IPR001611 Leu-rich_rpt 263 308
No external refs found!