- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : SHM2
Description : serine hydroxymethyltransferase *(SHM). serine hydroxymethyltransferase. EC_2.1 transferase transferring one-carbon group
Gene families : OG0000639 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000639_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_107121.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_80 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003743 | translation initiation factor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003824 | catalytic activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004126 | cytidine deaminase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004386 | helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004725 | protein tyrosine phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006213 | pyrimidine nucleoside metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006216 | cytidine catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006470 | protein dephosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009116 | nucleoside metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009119 | ribonucleoside metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009164 | nucleoside catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009972 | cytidine deamination | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016311 | dephosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016791 | phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016972 | thiol oxidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019239 | deaminase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034656 | nucleobase-containing small molecule catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0042454 | ribonucleoside catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044248 | cellular catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044282 | small molecule catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0045182 | translation regulator activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046087 | cytidine metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046131 | pyrimidine ribonucleoside metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046133 | pyrimidine ribonucleoside catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046135 | pyrimidine nucleoside catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0072529 | pyrimidine-containing compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901658 | glycosyl compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR039429 | SHMT-like_dom | 58 | 454 |
| No external refs found! |