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  5. Lsat_1_v5_gn_5_94521.1

Lsat_1_v5_gn_5_94521.1 (PABP8, PAB8)


Aliases : PABP8, PAB8

Description : not classified


Gene families : OG0000776 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000776_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_94521.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_521

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_5_37760.1 No alias TruD-type tRNA pseudouridine synthase 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_65800.1 ATPAB2, PAB2, PABP2 mRNA poly-A-tail binding factor *(PABP) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006801 superoxide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015399 primary active transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016409 palmitoyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072593 reactive oxygen species metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140359 ABC-type transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!