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  5. Lsat_1_v5_gn_5_171361.1

Lsat_1_v5_gn_5_171361.1 (DDB2)


Aliases : DDB2

Description : substrate adaptor component *(DDB2) of UV-DDB CUL4-based E3 ubiquitin ligase module


Gene families : OG0018318 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_171361.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_207


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000469 obsolete cleavage involved in rRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004743 pyruvate kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006096 glycolytic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006376 mRNA splice site recognition IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022618 protein-RNA complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030955 potassium ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031420 alkali metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071826 protein-RNA complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001680 WD40_rpt 170 200
No external refs found!