Lsat_1_v5_gn_5_133361.1 (ATABCG40, ABCG40,...)

Aliases : ATABCG40, ABCG40, PDR12, ATPDR12

Description : subfamily ABCG transporter

Gene families : OG0000427 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000427_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_133361.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_40

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0030170	pyridoxal phosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032502	developmental process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048364	root development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048367	shoot system development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048731	system development	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048856	anatomical structure development	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0099402	plant organ development	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	860	1011
IPR003439	ABC_transporter-like_ATP-bd	181	363
IPR029481	ABC_trans_N	96	156
IPR013525	ABC2_TM	1195	1408
IPR013525	ABC2_TM	517	729
IPR043926	ABCG_dom	396	448
IPR013581	PDR_assoc	734	795

External Links

No external refs found!