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  5. Lsat_1_v5_gn_5_13160.1

Lsat_1_v5_gn_5_13160.1 (HAL3, HAL3B, ATHAL3B)


Aliases : HAL3, HAL3B, ATHAL3B

Description : phosphopantothenoylcysteine decarboxylase. EC_4.1 carbon-carbon lyase


Gene families : OG0017674 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_13160.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_92


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005669 transcription factor TFIID complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008408 3'-5' exonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019104 DNA N-glycosylase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003382 Flavoprotein 83 256
No external refs found!