Lsat_1_v5_gn_4_95560.1 (ATMRP6, ABCC8, MRP6)

Aliases : ATMRP6, ABCC8, MRP6

Description : subfamily ABCC transporter

Gene families : OG0000428 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000428_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_95560.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_109

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004126	cytidine deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006216	cytidine catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009119	ribonucleoside metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009164	nucleoside catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009972	cytidine deamination	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019439	aromatic compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042454	ribonucleoside catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046087	cytidine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046700	heterocycle catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901575	organic substance catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901658	glycosyl compound catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	5	195
IPR011527	ABC1_TM_dom	539	779
IPR003439	ABC_transporter-like_ATP-bd	263	397
IPR003439	ABC_transporter-like_ATP-bd	837	985

External Links

No external refs found!

Lsat_1_v5_gn_4_95560.1 (ATMRP6, ABCC8, MRP6)

Expression Profile

Co-expression Networks

Functional Annotation