Lsat_1_v5_gn_4_48440.1 (DOT4)

Aliases : DOT4

Description : RNA editing factor *(DOT4)

Gene families : OG0016929 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_48440.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_135

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005525	GTP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR046848	E_motif	690	752
IPR002885	Pentatricopeptide_rpt	648	672
IPR002885	Pentatricopeptide_rpt	441	462
IPR002885	Pentatricopeptide_rpt	569	598
IPR002885	Pentatricopeptide_rpt	340	365
IPR002885	Pentatricopeptide_rpt	611	637
IPR032867	DYW_dom	800	879
IPR002885	Pentatricopeptide_rpt	367	414
IPR002885	Pentatricopeptide_rpt	264	312
IPR002885	Pentatricopeptide_rpt	466	513
IPR002885	Pentatricopeptide_rpt	165	211

External Links

No external refs found!