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  5. Lsat_1_v5_gn_4_148360.1

Lsat_1_v5_gn_4_148360.1


Description : effector receptor *(NLR)


Gene families : OG0000032 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_148360.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_2_15981.1 No alias effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_25361.1 DM2h not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_86861.1 No alias effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_144921.1 BAR1 effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_147380.1 TN9 effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_8_82140.1 No alias effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_91461.1 No alias effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_93340.1 TN9 effector receptor *(NLR) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEA Interproscan
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003774 cytoskeletal motor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0016459 myosin complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002182 NB-ARC 208 431
IPR011713 Leu-rich_rpt_3 620 637
IPR000157 TIR_dom 14 189
No external refs found!