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  5. Lsat_1_v5_gn_4_120860.1

Lsat_1_v5_gn_4_120860.1 (ABCG29, AtABCG29, ATPDR1, PDR1)


Aliases : ABCG29, AtABCG29, ATPDR1, PDR1

Description : subfamily ABCG transporter


Gene families : OG0000469 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_120860.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_212

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_4_99441.1 ABCG36,... subfamily ABCG transporter 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002831 regulation of response to biotic stimulus IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004568 chitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006022 aminoglycan metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006026 aminoglycan catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006030 chitin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006032 chitin catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006040 amino sugar metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008061 chitin binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010112 regulation of systemic acquired resistance IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015299 obsolete solute:proton antiporter activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016998 cell wall macromolecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031347 regulation of defense response IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032101 regulation of response to external stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044036 cell wall macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046348 amino sugar catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0080134 regulation of response to stress IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901071 glucosamine-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901072 glucosamine-containing compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901136 carbohydrate derivative catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901565 organonitrogen compound catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013581 PDR_assoc 742 806
IPR003439 ABC_transporter-like_ATP-bd 884 1036
IPR043926 ABCG_dom 1065 1137
IPR043926 ABCG_dom 404 486
IPR013525 ABC2_TM 1182 1394
IPR013525 ABC2_TM 525 737
IPR029481 ABC_trans_N 99 164
IPR003439 ABC_transporter-like_ATP-bd 189 371
No external refs found!