- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : SDN2
Description : methylated miRNA exoribonuclease *(SDN)
Gene families : OG0016304 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_90320.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_135 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003684 | damaged DNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004097 | catechol oxidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004619 | phosphoglycerate mutase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005524 | ATP binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005747 | mitochondrial respiratory chain complex I | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006006 | glucose metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006007 | glucose catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006259 | DNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006284 | base-excision repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019318 | hexose metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019320 | hexose catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0030145 | manganese ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030964 | NADH dehydrogenase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0043167 | ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0044183 | protein folding chaperone | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044282 | small molecule catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0045271 | respiratory chain complex I | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046365 | monosaccharide catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0051087 | protein-folding chaperone binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0098803 | respiratory chain complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140662 | ATP-dependent protein folding chaperone | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1902495 | transmembrane transporter complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1990351 | transporter complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013520 | Exonuclease_RNaseT/DNA_pol3 | 117 | 266 |
| No external refs found! |