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  5. Lsat_1_v5_gn_3_73641.1

Lsat_1_v5_gn_3_73641.1


Description : protein factor (NERD) of non-canonical RdDM pathway


Gene families : OG0016157 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_73641.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_227


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004190 aspartic-type endopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004721 phosphoprotein phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004842 ubiquitin-protein transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005789 endoplasmic reticulum membrane IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006810 transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016307 obsolete phosphatidylinositol phosphate kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016311 dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016567 protein ubiquitination IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016746 acyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016755 aminoacyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019787 ubiquitin-like protein transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032446 protein modification by small protein conjugation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0036211 protein modification process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043412 macromolecule modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051641 cellular localization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070001 aspartic-type peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140096 catalytic activity, acting on a protein IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1990380 K48-linked deubiquitinase activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 346 416
IPR000571 Znf_CCCH 1421 1444
IPR003169 GYF 798 836
IPR004343 Plus-3_dom 482 585
No external refs found!