Lsat_1_v5_gn_3_64081.1 (NRPD6A, NRPE6A, NRPB6A)

Aliases : NRPD6A, NRPE6A, NRPB6A

Description : component *(NRP-ABCDE6) of RNA polymerase complexes

Gene families : OG0033463 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_64081.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_40

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004619	phosphoglycerate mutase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006006	glucose metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006007	glucose catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019320	hexose catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030964	NADH dehydrogenase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0045271	respiratory chain complex I	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046365	monosaccharide catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990351	transporter complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006110	Pol_omega/Rpo6/RPB6	62	113

External Links

No external refs found!

Lsat_1_v5_gn_3_64081.1 (NRPD6A, NRPE6A, NRPB6A)

Expression Profile

Co-expression Networks

Functional Annotation