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  5. Lsat_1_v5_gn_3_36980.1

Lsat_1_v5_gn_3_36980.1 (SMC1, ATSMC1, TTN8)


Aliases : SMC1, ATSMC1, TTN8

Description : not classified


Gene families : OG0000678 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_36980.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_3_36921.1 ATSBT1.3, SBT1.3 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_3_37061.1 TRFL6 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_3_38341.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_3_38381.1 CYCB3;1 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0006952 defense response IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004097 catechol oxidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004497 monooxygenase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005506 iron ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005544 calcium-dependent phospholipid binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006568 tryptophan metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006576 biogenic amine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006586 indolalkylamine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009415 response to water IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019915 lipid storage IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042430 indole-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051235 maintenance of location IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070403 NAD+ binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000916 Bet_v_I/MLP 3 150
No external refs found!