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  5. Lsat_1_v5_gn_3_21960.1

Lsat_1_v5_gn_3_21960.1 (HSP98.7, CLPB-M, CLPB4)


Aliases : HSP98.7, CLPB-M, CLPB4

Description : organellar chaperone *(Clp-p/Clp-m)


Gene families : OG0008826 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_21960.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr4.03084 HSP98.7, CLPB-M, CLPB4 organellar chaperone *(Clp-p/Clp-m) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004146 dihydrofolate reductase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006575 cellular modified amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006760 folic acid-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016846 carbon-sulfur lyase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030127 COPII vesicle coat IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042558 pteridine-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046653 tetrahydrofolate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140662 ATP-dependent protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR019489 Clp_ATPase_C 861 939
IPR003959 ATPase_AAA_core 685 854
IPR003959 ATPase_AAA_core 289 421
IPR041546 ClpA/ClpB_AAA_lid 427 529
IPR004176 Clp_R_dom 179 230
IPR004176 Clp_R_dom 103 154
No external refs found!