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  5. Lsat_1_v5_gn_3_111261.1

Lsat_1_v5_gn_3_111261.1


Description : not classified


Gene families : OG0000484 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_111261.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_3_111360.1 AtPPR-AC, PPR-AC not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004619 phosphoglycerate mutase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005488 binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005996 monosaccharide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006006 glucose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006007 glucose catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006952 defense response IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019318 hexose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019320 hexose catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044282 small molecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046365 monosaccharide catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051087 protein-folding chaperone binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 246 279
IPR002885 Pentatricopeptide_rpt 458 489
IPR002885 Pentatricopeptide_rpt 353 382
IPR002885 Pentatricopeptide_rpt 286 335
IPR002885 Pentatricopeptide_rpt 179 229
IPR002885 Pentatricopeptide_rpt 391 439
IPR002885 Pentatricopeptide_rpt 531 579
IPR002885 Pentatricopeptide_rpt 98 157
IPR002885 Pentatricopeptide_rpt 500 528
No external refs found!