Lsat_1_v5_gn_2_92080.1 (RPOA)


Aliases : RPOA

Description : core component *(RpoA) of plastid-encoded RNA polymerase. component *(uS11c) of small plastid ribosomal-subunit proteome


Gene families : OG0001994 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_92080.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0091.00036 RPOA core component *(RpoA) of plastid-encoded RNA polymerase 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0091.00037 RPOA core component *(RpoA) of plastid-encoded RNA polymerase 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005984 disaccharide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005991 trehalose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005992 trehalose biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008037 cell recognition IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009311 oligosaccharide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009312 oligosaccharide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009767 photosynthetic electron transport chain IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016051 carbohydrate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016168 chlorophyll binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0017038 protein import IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019684 photosynthesis, light reaction IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0034061 DNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046351 disaccharide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048544 recognition of pollen IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011262 DNA-dir_RNA_pol_insert 169 260
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 138 317
IPR001971 Ribosomal_uS11 26 110
No external refs found!