Lsat_1_v5_gn_2_6980.1 (NRPC1)

Aliases : NRPC1

Description : component *(NRPC1) of RNA polymerase III complex

Gene families : OG0002103 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002103_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_6980.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_135

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr3.04975	NRPC1	component *(NRPC1) of RNA polymerase III complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030964	NADH dehydrogenase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043531	ADP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0045271	respiratory chain complex I	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098803	respiratory chain complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990351	transporter complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007066	RNA_pol_Rpb1_3	539	718
IPR007083	RNA_pol_Rpb1_4	747	849
IPR000722	RNA_pol_asu	370	536
IPR007080	RNA_pol_Rpb1_1	30	368
IPR007081	RNA_pol_Rpb1_5	856	1334

External Links

No external refs found!

Lsat_1_v5_gn_2_6980.1 (NRPC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation