Lsat_1_v5_gn_2_27040.1 (LOV1)

Aliases : LOV1

Description : not classified

Gene families : OG0000106 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000106_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_27040.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_147

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_2_27321.1	No alias	not classified	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_28280.1	POQR	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0120227	acyl-CoA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901567	fatty acid derivative binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	170	413
IPR041118	Rx_N	13	95

External Links

No external refs found!