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  5. Lsat_1_v5_gn_1_79540.1

Lsat_1_v5_gn_1_79540.1


Description : not classified


Gene families : OG0000030 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_79540.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_102041.1 RLM3, TN16 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002831 regulation of response to biotic stimulus IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003774 cytoskeletal motor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003777 microtubule motor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004601 peroxidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004842 ubiquitin-protein transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005199 structural constituent of cell wall IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007017 microtubule-based process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007018 microtubule-based movement IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009664 plant-type cell wall organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010112 regulation of systemic acquired resistance IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016209 antioxidant activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019787 ubiquitin-like protein transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031347 regulation of defense response IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032101 regulation of response to external stimulus IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0080134 regulation of response to stress IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002182 NB-ARC 37 162
IPR025558 DUF4283 1139 1272
No external refs found!