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  5. Lsat_1_v5_gn_1_79240.1

Lsat_1_v5_gn_1_79240.1 (NIP6, NIP6;1, NLM7)


Aliases : NIP6, NIP6;1, NLM7

Description : chromatin architectural modulator *(DEK)


Gene families : OG0000314 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_79240.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_7_111240.1 NIP6, NIP6;1, NLM7 E3 ubiquitin ligase *(SPL) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0015267 channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005985 sucrose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006099 tricarboxylic acid cycle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016157 sucrose synthase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0045273 respiratory chain complex II IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098803 respiratory chain complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140662 ATP-dependent protein folding chaperone IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000425 MIP 209 274
IPR000425 MIP 21 83
No external refs found!