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  5. Lsat_1_v5_gn_1_66260.1

Lsat_1_v5_gn_1_66260.1 (RLM3, TN16)


Aliases : RLM3, TN16

Description : effector receptor *(NLR)


Gene families : OG0000030 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_66260.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_101960.1 RPP4, CHS2 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_102041.1 RLM3, TN16 effector receptor *(NLR) 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_102120.1 BURNOUT1 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_80040.1 RLM3, TN16 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_91860.1 No alias effector receptor *(NLR) 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_91880.1 RPP4, CHS2 effector receptor *(NLR) 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_91940.1 No alias effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_93520.1 No alias effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_94121.1 No alias effector receptor *(NLR) 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_94481.1 No alias effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_94701.1 ATFP3, AtHMP54, FP3 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_95000.1 RLM3, TN16 effector receptor *(NLR) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEA Interproscan
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008375 acetylglucosaminyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016301 kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016310 phosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017025 TBP-class protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0036211 protein modification process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043412 macromolecule modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045048 protein insertion into ER membrane IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051205 protein insertion into membrane IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051668 localization within membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070403 NAD+ binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071816 tail-anchored membrane protein insertion into ER membrane IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072657 protein localization to membrane IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090150 establishment of protein localization to membrane IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000157 TIR_dom 28 203
IPR002182 NB-ARC 219 451
IPR045344 C-JID 984 1110
No external refs found!