1. Home
  2. Species
  3. Lactuca sativa
  4. Sequence
  5. Lsat_1_v5_gn_1_64840.1

Lsat_1_v5_gn_1_64840.1 (HTB4)


Aliases : HTB4

Description : histone *(H2B)


Gene families : OG0000771 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000771_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_64840.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_64700.1 HTB4 histone *(H2B) 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_64780.1 HTB4 histone *(H2B) 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_64800.1 HTB4 histone *(H2B) 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_66401.1 HTB4 histone *(H2B) 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_63781.1 HTB2, H2B histone *(H2B) 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003678 DNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003774 cytoskeletal motor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003777 microtubule motor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006275 regulation of DNA replication IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006974 DNA damage response IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007017 microtubule-based process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007018 microtubule-based movement IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008092 cytoskeletal protein binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015631 tubulin binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030983 mismatched DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043138 3'-5' DNA helicase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051716 cellular response to stimulus IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 4 122
No external refs found!