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  5. Lsat_1_v5_gn_1_36021.1

Lsat_1_v5_gn_1_36021.1 (AtRH20, RH20)


Aliases : AtRH20, RH20

Description : regulatory RNA helicase *(RH20/RH30) of virus replication


Gene families : OG0000139 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_36021.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_237


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0000492 box C/D snoRNP assembly IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022618 protein-RNA complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031011 Ino80 complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071826 protein-RNA complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0097346 INO80-type complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 122 293
IPR001650 Helicase_C 329 438
No external refs found!