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  5. Mp7g15050.1

Mp7g15050.1 (AtSF1, SOT4, SF1)


Aliases : AtSF1, SOT4, SF1

Description : pre-mRNA splicing factor *(SF1)


Gene families : OG0060094 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha (Mpo) PCC: Mp7g15050.1
Cluster Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_83


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004521 RNA endonuclease activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0004525 ribonuclease III activity IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0008047 enzyme activator activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0018995 host cellular component IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0031011 Ino80 complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0033643 host cell part IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0033646 host intracellular part IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0033647 host intracellular organelle IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0033648 host intracellular membrane-bounded organelle IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0042025 host cell nucleus IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0043085 positive regulation of catalytic activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0044093 positive regulation of molecular function IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0050790 regulation of catalytic activity IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0065009 regulation of molecular function IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0097346 INO80-type complex IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0110154 RNA decapping IEP Marchantia polymorpha GO terms from Neighborhoods
BP GO:0110156 methylguanosine-cap decapping IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Marchantia polymorpha GO terms from Neighborhoods
MF GO:0140677 molecular function activator activity IEP Marchantia polymorpha GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Marchantia polymorpha GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032570 SF1-HH 229 344
IPR000504 RRM_dom 701 769
IPR004088 KH_dom_type_1 363 436
No external refs found!