Mp7g08220.1 (CLERK, CIK2)

Aliases : CLERK, CIK2

Description : EC_5.4 intramolecular transferase. TruA-type tRNA pseudouridine synthase

Gene families : OG0059539 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp7g08220.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_171

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015928	fucosidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0035596	methylthiotransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0050497	alkylthioltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	413	493

External Links

No external refs found!

Mp7g08220.1 (CLERK, CIK2)

Expression Profile

Co-expression Networks

Functional Annotation