Mp5g23860.1

Description : plant-specific E3 ubiquitin ligase *(RSL/RFA)

Gene families : OG0057182 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp5g23860.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_37

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007034	vacuolar transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016636	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0040008	regulation of growth	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045927	positive regulation of growth	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051743	red chlorophyll catabolite reductase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1902911	protein kinase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1990316	Atg1/ULK1 kinase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	167	276
IPR002867	IBR_dom	387	466
IPR002867	IBR_dom	487	537
IPR000571	Znf_CCCH	590	615
IPR018957	Znf_C3HC4_RING-type	318	364

External Links

No external refs found!

Mp5g23860.1

Expression Profile

Co-expression Networks

Functional Annotation