Mp4g21160.1 (EMB1989, NRPB2, RPB2)

Aliases : EMB1989, NRPB2, RPB2

Description : component *(NRPB2) of RNA polymerase II complex

Gene families : OG0000769 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp4g21160.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_124

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra013550	EMB1989, NRPB2, RPB2	component *(NRPB2) of RNA polymerase II complex	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01394	EMB1989, NRPB2, RPB2	component *(NRPB2) of RNA polymerase II complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005669	transcription factor TFIID complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005783	endoplasmic reticulum	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015020	glucuronosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0017003	protein-heme linkage	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0017006	protein-tetrapyrrole linkage	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0048583	regulation of response to stimulus	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0060090	molecular adaptor activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007644	RNA_pol_bsu_protrusion	34	443
IPR007641	RNA_pol_Rpb2_7	1082	1173
IPR007645	RNA_pol_Rpb2_3	468	532
IPR007120	DNA-dir_RNAP_su2_dom	712	1080
IPR007646	RNA_pol_Rpb2_4	567	628
IPR007642	RNA_pol_Rpb2_2	204	395
IPR007647	RNA_pol_Rpb2_5	652	703

External Links

No external refs found!

Mp4g21160.1 (EMB1989, NRPB2, RPB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation