Mp4g00830.1 (SWA1, EDA13, EDA19)

Aliases : SWA1, EDA13, EDA19

Description : SSU processome assembly factor *(SWA1)

Gene families : OG0053733 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp4g00830.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_154

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001680	WD40_rpt	118	155
IPR001680	WD40_rpt	165	198
IPR018983	U3_snoRNA-assocProt_15_C	385	526

External Links

No external refs found!

Mp4g00830.1 (SWA1, EDA13, EDA19)

Expression Profile

Co-expression Networks

Functional Annotation