Mp3g10960.1 (ATXPB1, XPB1)

Aliases : ATXPB1, XPB1

Description : component *(SSL2/XPB) of multifunctional TFIIh complex. component *(SSL2/XPB) of TFIIh basal transcription factor complex

Gene families : OG0052533 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp3g10960.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_7

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004521	RNA endonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0007034	vacuolar transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019104	DNA N-glycosylase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034227	tRNA thio-modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032438	ERCC3_RAD25_C	470	718
IPR032830	XPB/Ssl2_N	72	196
IPR006935	Helicase/UvrB_N	288	444

External Links

No external refs found!

Mp3g10960.1 (ATXPB1, XPB1)

Expression Profile

Co-expression Networks

Functional Annotation