Mp1g29820.1

Description : EC_5.4 intramolecular transferase. TruA-type tRNA pseudouridine synthase

Gene families : OG0049597 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g29820.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_90

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0005975	carbohydrate metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006629	lipid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016757	glycosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030258	lipid modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0030259	lipid glycosylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044255	cellular lipid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	227	333
IPR020097	PsdUridine_synth_TruA_a/b_dom	87	188

External Links

No external refs found!