Mp1g07420.1

Description : component *(uS13) of small ribosomal-subunit (SSU) proteome

Gene families : OG0002803 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002803_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g07420.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
Bra028028	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra034447	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra037884	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_184421.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000347	THO complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0000445	THO complex part of transcription export complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030286	dynein complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_uS13	14	142

External Links

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Mp1g07420.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation