Mp1g06710.1 (MSH3, ATMSH3)

Aliases : MSH3, ATMSH3

Description : component *(MSH3) of MSH2-x mismatch repair heterodimers

Gene families : OG0047612 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g06710.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_28

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0003352	regulation of cilium movement	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006270	DNA replication initiation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0032886	regulation of microtubule-based process	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0042575	DNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0043625	delta DNA polymerase complex	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0060632	regulation of microtubule-based movement	IEP	Marchantia polymorpha GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007860	DNA_mmatch_repair_MutS_con_dom	460	600
IPR007695	DNA_mismatch_repair_MutS-lik_N	293	403
IPR000432	DNA_mismatch_repair_MutS_C	1020	1237
IPR007696	DNA_mismatch_repair_MutS_core	621	965

External Links

No external refs found!

Mp1g06710.1 (MSH3, ATMSH3)

Expression Profile

Co-expression Networks

Functional Annotation