Mp1g05580.1 (RFC3)

Aliases : RFC3

Description : not classified

Gene families : OG0047511 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha (Mpo) PCC: Mp1g05580.1
Cluster	Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm): Cluster_139

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0000287	magnesium ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0004832	valine-tRNA ligase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006166	purine ribonucleoside salvage	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006190	inosine salvage	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008252	nucleotidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008253	5'-nucleotidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0008658	penicillin binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009119	ribonucleoside metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0009163	nucleoside biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0033293	monocarboxylic acid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042278	purine nucleoside metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043101	purine-containing compound salvage	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0043174	nucleoside salvage	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046102	inosine metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046103	inosine biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0050483	IMP 5'-nucleotidase activity	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Marchantia polymorpha GO terms from Neighborhoods
MF	GO:1901681	sulfur compound binding	IEP	Marchantia polymorpha GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000529	Ribosomal_bS6	165	252

External Links

No external refs found!

Mp1g05580.1 (RFC3)

Expression Profile

Co-expression Networks

Functional Annotation