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  5. Spov3_chr6.03158

Spov3_chr6.03158


Description : not classified


Gene families : OG0000190 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000190_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.03158
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0008.00067 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0619.00001 ALG12, EBS4 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02158 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02260 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02766 ATR7 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00121 ALG12, EBS4 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01943 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02756 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03892 ATREM1, REM1, REM34 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004721 phosphoprotein phosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016311 dephosphorylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!