Spov3_chr6.02210 (GRF4, AtGRF4)

Aliases : GRF4, AtGRF4

Description : component *(GRF) of GRF-GIF transcriptional complex

Gene families : OG0002813 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002813_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr6.02210

Target	Alias	Description	ECC score	Gene Family Method
Bra005268	AtGRF3, GRF3	component *(GRF) of GRF-GIF transcriptional complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra017240	AtGRF3, GRF3	component *(GRF) of GRF-GIF transcriptional complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra023066	AtGRF3, GRF3	component *(GRF) of GRF-GIF transcriptional complex	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030014	CCR4-NOT complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0031262	Ndc80 complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0180019	Knl1/Spc105 complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	169	211
IPR014978	Gln-Leu-Gln_QLQ	96	129

External Links

No external refs found!

Spov3_chr6.02210 (GRF4, AtGRF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation