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  5. Spov3_chr6.00881

Spov3_chr6.00881 (AT59)


Aliases : AT59

Description : pectate lyase. EC_4.2 carbon-oxygen lyase


Gene families : OG0003219 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003219_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.00881
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_23


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004519 endonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004521 RNA endonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004540 RNA nuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004650 polygalacturonase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0005975 carbohydrate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 33 86
IPR002022 Pec_lyase 180 362
No external refs found!