1. Home
  2. Species
  3. Spinacia oleracea
  4. Sequence
  5. Spov3_chr5.03472

Spov3_chr5.03472


Description : not classified


Gene families : OG0000244 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000244_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr5.03472
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr1.02388 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02612 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03376 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006897 endocytosis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015074 DNA integration IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016209 antioxidant activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0098657 import into cell IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001680 WD40_rpt 271 308
IPR001680 WD40_rpt 232 265
IPR005828 MFS_sugar_transport-like 474 556
No external refs found!