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  5. Spov3_chr5.02339

Spov3_chr5.02339 (GIF, GIF1, ATGIF1, AN3)


Aliases : GIF, GIF1, ATGIF1, AN3

Description : SMARCL component *(AN3/GIF) of SWI/SNF chromatin remodeling complex. cofactor component *(GIF) of GRF-GIF transcriptional complex


Gene families : OG0002104 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002104_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr5.02339
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Bra010002 GIF, GIF1, ATGIF1, AN3 SMARCL component *(AN3/GIF) of SWI/SNF chromatin... 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra020616 GIF, GIF1, ATGIF1, AN3 cofactor component *(GIF) of GRF-GIF transcriptional... 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004601 peroxidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005488 binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0005975 carbohydrate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006073 obsolete cellular glucan metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006355 regulation of DNA-templated transcription IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009889 regulation of biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016209 antioxidant activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019222 regulation of metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031326 regulation of cellular biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0048046 apoplast IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065007 biological regulation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:2001141 regulation of RNA biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007726 SS18_N 20 77
No external refs found!