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  5. Spov3_chr5.01356

Spov3_chr5.01356 (APK4)


Aliases : APK4

Description : not classified


Gene families : OG0000016 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000016_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr5.01356
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0003.00109 RGLG4 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0016.00008 RFA5 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0026.00017 GRP23, ATGRP23 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0106.00004 HAE, RLK5 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0265.00003 APK4 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0265.00004 HAE, RLK5 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S07.00039 ACT12 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01974 RID4, GEND1 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02842 RGLG4 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01320 ACT12 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01370 RID4, GEND1 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02584 ACT12 not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04595 ABCI19, ATNAP4 not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05050 HAE, RLK5 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05051 NET1A not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05495 RID4, GEND1 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00212 ATSYP42,... not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03112 No alias not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01587 PP2C49 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02075 FY, WDR33 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03668 HAE, RLK5 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01358 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01531 HAE, RLK5 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02746 HAE, RLK5 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03343 KR not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03494 HAE, RLK5 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03609 ACT12 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03719 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04042 ACT12 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01569 ATGWD3, OK1, PWD not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02462 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03057 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03058 AGO9 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.03059 ZAT4 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041373 RT_RNaseH 216 319
IPR000477 RT_dom 3 125
IPR041588 Integrase_H2C2 427 477
IPR001584 Integrase_cat-core 495 591
No external refs found!