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  5. Spov3_chr4.03879

Spov3_chr4.03879


Description : not classified


Gene families : OG0000080 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.03879

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0001.00161 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0012.00082 iqd33 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0037.00053 GLR3.6, ATGLR3.6 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0062.00018 PG18 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S08.00041 GLR3.6, ATGLR3.6 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01593 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01642 GLR3.6, ATGLR3.6 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01991 GLR3.6, ATGLR3.6 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03646 CYP71B16 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03944 ATEXO70A1, EXO70A1 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.04329 ATSOFL1, SOFL1 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.05115 TBL6 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03896 CAE1, MRH2, AtKINUc, ARK1 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03606 GLR3.6, ATGLR3.6 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02678 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02359 GLR3.6, ATGLR3.6 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003954 NADH dehydrogenase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004190 aspartic-type endopeptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006412 translation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015399 primary active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043226 organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0070001 aspartic-type peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 72 99
No external refs found!