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  5. Spov3_chr4.02504

Spov3_chr4.02504


Description : LSU processome maturation factor *(Sdo1)


Gene families : OG0000710 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000710_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.02504
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0006.00083 No alias LSU processome maturation factor *(Sdo1) 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0047.00006 No alias LSU processome maturation factor *(Sdo1) 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0059.00012 No alias LSU processome maturation factor *(Sdo1) 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S01.00137 No alias LSU processome maturation factor *(Sdo1) 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04167 No alias LSU processome maturation factor *(Sdo1) 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006282 regulation of DNA repair IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0080134 regulation of response to stress IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0080135 regulation of cellular response to stress IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR018978 SDO1/SBDS_central 71 131
No external refs found!