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  5. Spov3_chr4.02399

Spov3_chr4.02399


Description : not classified


Gene families : OG0000103 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000103_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.02399
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr2.02526 PHT2;1, ORF02 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03436 MAN1, ATFRD3, FRD3 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02366 ATSBT3.3, SBT3.3 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02367 CYP709B3 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041577 RT_RNaseH_2 854 933
IPR001584 Integrase_cat-core 1107 1198
IPR041588 Integrase_H2C2 1028 1085
No external refs found!