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  5. Spov3_chr4.01824

Spov3_chr4.01824 (PAB1)


Aliases : PAB1

Description : not classified


Gene families : OG0000130 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr4.01824
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Spov3_S15.00014 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02000 PEG9 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.01275 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01825 No alias not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003954 NADH dehydrogenase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004242 Transposase_21 473 683
IPR029480 Transpos_assoc 211 282
IPR025452 DUF4218 864 974
No external refs found!