Spov3_chr4.00279 (NET1A)

Aliases : NET1A

Description : not classified

Gene families : OG0000016 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000016_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr4.00279
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_421

Target	Alias	Description	ECC score	Gene Family Method
Spov3_C0003.00109	RGLG4	not classified	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0016.00051	No alias	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0026.00017	GRP23, ATGRP23	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0048.00018	AtCHC1, CHC1, HAS1	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0106.00004	HAE, RLK5	not classified	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0265.00004	HAE, RLK5	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01597	ATGWD3, OK1, PWD	not classified	0.08	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02842	RGLG4	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01370	RID4, GEND1	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02133	BLH4, SAW2	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02584	ACT12	not classified	0.08	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02987	ACT12	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04595	ABCI19, ATNAP4	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00212	ATSYP42,...	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00213	RGLG4	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03112	No alias	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03190	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01587	PP2C49	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02075	FY, WDR33	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03668	HAE, RLK5	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01358	No alias	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.01531	HAE, RLK5	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02746	HAE, RLK5	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02983	HAE, RLK5	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03343	KR	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03494	HAE, RLK5	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03609	ACT12	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01569	ATGWD3, OK1, PWD	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01919	RGLG4	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02462	No alias	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004521	RNA endonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030896	checkpoint clamp complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070001	aspartic-type peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041588	Integrase_H2C2	1335	1385
IPR000477	RT_dom	1002	1105
IPR001584	Integrase_cat-core	1403	1499
IPR041373	RT_RNaseH	1124	1227
IPR005162	Retrotrans_gag_dom	127	217

External Links

No external refs found!

Spov3_chr4.00279 (NET1A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation