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  5. Spov3_chr3.03754

Spov3_chr3.03754 (AIN1, PLATZ1)


Aliases : AIN1, PLATZ1

Description : PLATZ-type transcription factor


Gene families : OG0019909 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr3.03754
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_213


Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 44 105
IPR006734 PLATZ 384 453
IPR017956 AT_hook_DNA-bd_motif 785 794
IPR017956 AT_hook_DNA-bd_motif 751 759
IPR017956 AT_hook_DNA-bd_motif 823 834
IPR017956 AT_hook_DNA-bd_motif 723 732
No external refs found!