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  5. Spov3_chr3.03420

Spov3_chr3.03420


Description : not classified


Gene families : OG0000110 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr3.03420

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0006.00030 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01175 CLSY, CLSY1, CHR38 not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.01177 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051276 chromosome organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007021 DUF659 132 218
IPR008906 HATC_C_dom 444 511
IPR003656 Znf_BED 21 64
No external refs found!